rs6662684 chr1:10430732 G>C

Sequence
taactgccgcgggtggtgctggga[G/C]gcggtttccgcggcaacgcggctg
ASB in cell types
HEK293 (embryonic kidney) U87 (glioblastoma) UCLA1 hESCs HepG2 (hepatoblastoma)
ASB for transcription factors
BRD3_HUMAN CTCF_HUMAN AP2C_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD3_HUMAN 2.16 -1.67 2.0·10-41.00 1.50 n/a n/a
CTCF_HUMAN 0.93 0.81 1.3·10-31.00 1.23 n/a No Hit
AP2C_HUMAN 2.63 -2.29 2.1·10-31.00 1.00 n/a No Hit
TYY1_HUMAN 1.97 0.34 3.1·10-31.00 2.00 n/a No Hit
SPT5H_HUMAN 1.59 -0.43 4.1·10-31.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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