rs6667223 chr1:21762348 G>A
- Sequence
atctctcctgggaacagtgacaag[G/A]atatactaggaaggttctttcgaa
- ASB in cell types
- germinal center B-cells GM02630 (Fanconi anemi)
- ASB for transcription factors
- MEF2B_HUMAN CBP_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | n/a | 3.24 | 4.00 | n/a | No Hit | |||
| CBP_HUMAN | -0.64 | 3.40 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.34 | 1.55 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP abnormal involuntary movement scale, alzheimers disease, major depressive disorder, tardive dyskinesia, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Spleen, Thyroid, Whole_Blood