rs6680940 chr1:190575570 T>A

Sequence
ttcatagtgaggtcattgataaac[T/A]taaccatgctttgcaaatataatt
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN A2NVP9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.51 2.27 1.001.7·10-4 1.50 n/a No Hit
A2NVP9_HUMAN -4.16 2.44 1.002.7·10-3 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  fasting blood glucose,  neuroticism,  obesity with early age of onset (age >2),  parkinsons disease
GTEx eQTL Colon_Transverse,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial

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