rs6684539 chr1:11908216 A>G
- Sequence
tttactaaagatttccgtggagag[A/G]aacgagtgtgagtctgaaaccaat
- ASB in cell types
- HCT-116 (colon carcinoma) G401 (rhabdoid tumor of the kidney) HASM2 (Human airway smooth muscle 2) K562 (myelogenous leukemia)
- ASB for transcription factors
- MBD4_HUMAN CLOCK_HUMAN MED16_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MBD4_HUMAN | 1.40 | 0.14 | 1.42 | n/a | n/a | |||
| CLOCK_HUMAN | -1.66 | 2.71 | 2.00 | n/a | No Hit | |||
| MED16_HUMAN | 2.39 | 0.46 | 1.00 | n/a | n/a | |||
| CDK8_HUMAN | 1.13 | 0.21 | 1.21 | n/a | n/a |
Items per page:
1 – 4 of 4