rs6686904 chr1:157400092 C>T
- Sequence
caggtggtggtgagtttcaggctg[C/T]tgaggctgtggcagagggagtgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- TBX21_HUMAN SMCA5_HUMAN REQU_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | 1.87 | -1.66 | 1.00 | -0.70 | Weak Concordant | |||
| SMCA5_HUMAN | 2.87 | -2.94 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.28 | -1.98 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 0.93 | -0.99 | 1.25 | n/a | No Hit | |||
| RELB_HUMAN | 2.12 | -1.78 | 1.00 | n/a | No Hit |
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Motif analysis
