rs6688233 chr1:9275686 C>T
- Sequence
ccaccacccccacaacagctgact[C/T]atagctcgggtaagaggccaccac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) HCT-116 (colon carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- COT1_HUMAN NFIC_HUMAN KDM1A_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 2.22 | n/a | 1.00 | n/a | No Hit | |||
| NFIC_HUMAN | 3.08 | -2.77 | 1.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.68 | n/a | 2.25 | n/a | n/a | |||
| HDAC2_HUMAN | 3.67 | n/a | 1.00 | n/a | n/a | |||
| FOS_HUMAN | 2.90 | n/a | 2.00 | n/a | n/a |
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