ADASTRA v5.1.3
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rs6703582
chr1:15272668
G
>
C
Sequence
gcacacaggcagcagagacagagt[G/C]gaccctgtggagttctgagtcatt
ASB in cell types
HepG2 (hepatoblastoma)
GM12878 (female B-cells lymphoblastoid cell line)
CAR-T cells
GM02610 (Lymphoblastoid Cell Lines)
ASB for transcription factors
IRF4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IRF4_HUMAN
-0.03
1.50
1.00
0.02
1.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration (geographic atrophy)
GTEx eQTL
Artery_Aorta
,
Artery_Tibial
,
Colon_Sigmoid
,
Colon_Transverse
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Muscularis
,
Lung
,
Nerve_Tibial
,
Pancreas
,
Pituitary
,
Small_Intestine_Terminal_Ileum
,
Stomach
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)