rs6717482 chr2:55168596 A>C

Sequence
tccttaaagggccatcttcttaag[A/C]atacaaatcctccaagaatggtcc
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.14 0.01 0.031.00 1.83 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence,  microalbuminuria,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellum,  Heart_Left_Ventricle,  Muscle_Skeletal,  Thyroid

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