rs6725760 chr2:58448193 T>A
- Sequence
gttctaaaaatgagatcatgatca[T/A]ggcgccctctgctgaggattccct
- ASB in cell types
- foreskin keratinocyte GM19099 (female B-cells Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) pancreas
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.25 | 0.74 | 1.40 | -2.63 | Concordant | |||
| STAG1_HUMAN | 1.74 | -0.96 | 1.85 | n/a | n/a | |||
| RAD21_HUMAN | 0.99 | 0.47 | 1.21 | n/a | n/a | |||
| TYY1_HUMAN | 1.83 | -2.16 | 1.00 | -4.21 | Concordant | |||
| GATA2_HUMAN | 1.85 | -0.86 | 1.00 | n/a | No Hit |
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Motif analysis
