rs6761600 chr2:200526228 G>A
- Sequence
ctcgccgagctcccggagctgggt[G/A]ggggtgccccacgctgaaagagag
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) breast tumor GM18486 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ESR1_HUMAN SMCA4_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.63 | -4.96 | 2.00 | -1.85 | Weak Concordant | |||
| SMCA4_HUMAN | 0.69 | 1.83 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.94 | n/a | 1.00 | n/a | n/a |
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Motif analysis
