rs678511 chr1:37690755 T>C
- Sequence
aaattgggtggcggtggtggcatg[T/C]cctgttagctgtggagtcttttcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MOLT-4 (Adult T acute lymphoblastic leukemia) adult erythroblasts GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- HCFC1_HUMAN NFAC3_HUMAN NFYA_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 0.87 | -0.32 | 2.50 | n/a | n/a | |||
| NFAC3_HUMAN | -2.53 | 2.87 | 1.00 | n/a | No Hit | |||
| NFYA_HUMAN | 2.27 | -2.27 | 1.00 | n/a | No Hit | |||
| CDK9_HUMAN | 0.41 | 1.75 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP birth weight, cystatin c in serum, diastolic blood pressure (dbp), systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid