rs680552 chr15:65304253 G>T
- Sequence
attctgaattctgtgttaatcatt[G/T]acttgccaattttttctctttcaa
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.13 | 0.67 | 1.25 | n/a | No Hit | |||
| ANDR_HUMAN | -1.37 | 2.50 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 0.78 | 1.96 | 1.00 | n/a | n/a |
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