rs6814443 chr4:48126833 T>G

Sequence
agaactttgaaagagaaattgctg[T/G]tatcagtcagcaggcaggagtatc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MTA2_HUMAN NFIC_HUMAN HTF4_HUMAN NCOR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTA2_HUMAN 3.85 n/a 1.4·10-101.00 2.00 n/a n/a
NFIC_HUMAN 2.58 n/a 5.0·10-101.00 2.00 n/a No Hit
HTF4_HUMAN 2.61 n/a 7.7·10-101.00 4.00 n/a No Hit
NCOR1_HUMAN 3.06 n/a 7.2·10-71.00 4.00 n/a n/a
TAL1_HUMAN 1.97 -3.96 9.0·10-71.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  ldl cholesterol,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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