rs6830887 chr4:41331444 C>T

Sequence
cataacctgggttacattcttgag[C/T]gaatcatatcaacattggcagaac
ASB in cell types
VCaP (prostate carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
FOXA1_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.45 1.19 1.005.2·10-5 2.03 n/a No Hit
TF65_HUMAN -4.89 2.82 1.000.01 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  body mass index (bmi),  ldl cholesterol,  suicide attempts in bipolar disorder (females),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic

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