rs6906059 chr6:130993614 C>T

Sequence
gtagtacccagacggcctccctct[C/T]gatcttcagggggtatgtgtcttc
ASB in cell types
K562 (myelogenous leukemia) TF-1 (erythroleukemia)
ASB for transcription factors
NCOR1_HUMAN E4F1_HUMAN ARI1B_HUMAN EP400_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOR1_HUMAN 3.01 -1.59 9.8·10-81.00 3.33 n/a n/a
E4F1_HUMAN 2.38 n/a 1.2·10-51.00 2.00 n/a n/a
ARI1B_HUMAN 1.61 n/a 1.6·10-51.00 2.00 n/a n/a
EP400_HUMAN 2.32 n/a 5.2·10-51.00 2.00 n/a n/a
GABP1_HUMAN 1.25 n/a 6.2·10-31.00 2.00 n/a n/a
Items per page:
1 – 5 of 11

Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

Download