rs6927052 chr6:166627447 G>A
- Sequence
caatgagagcccaccgccccgccc[G/A]ggagagccccgcctctgccgatac
- ASB in cell types
- breast tumor monocytes from periferal blood foreskin keratinocyte
- ASB for transcription factors
- ESR1_HUMAN SRBP2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.14 | -0.80 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 2.77 | -0.15 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.23 | 0.13 | 1.64 | -3.57 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Thyroid