rs6933507 chr6:135760018 A>G
- Sequence
ttgaaaggcgaacgtctccccctc[A/G]cggacagtaccggaattcaacaag
- ASB in cell types
- liver GM12878 (female B-cells lymphoblastoid cell line) HUES64 (embryonic stem cells) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.92 | -2.50 | 1.28 | n/a | n/a | |||
| CTCF_HUMAN | 2.26 | -0.74 | 2.75 | 3.96 | Discordant | |||
| STAG1_HUMAN | 2.46 | -2.61 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood