rs6945151 chr7:151087650 C>A
- Sequence
gtgggaggcgccggcaggtccatc[C/A]gcgctttggccgggtcatgagcct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) K562 (myelogenous leukemia) breast tumor
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.04 | -0.95 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.34 | -1.38 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.85 | 0.14 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood