rs6962194 chr7:77122341 C>A

Sequence
gaaagctctgaactctgacctgga[C/A]cccttgcctaagtccacccccttt
ASB in cell types
K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) WA09 (embryonic stem cells) liver
ASB for transcription factors
ESR1_HUMAN NRF1_HUMAN COT1_HUMAN ZN143_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.60 0.02 4.6·10-91.00 1.71 n/a No Hit
NRF1_HUMAN 0.99 0.04 1.6·10-61.00 1.33 n/a No Hit
COT1_HUMAN 1.46 -1.46 2.4·10-61.00 1.00 0.14 Weak Discordant
ZN143_HUMAN 1.61 -1.05 5.0·10-61.00 1.50 n/a No Hit
MNT_HUMAN 1.59 -0.38 5.1·10-61.00 1.38 n/a n/a
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Motif analysis

NR2C2_HUMAN Discordant
NR2C2_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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