rs696616 chr1:150363697 G>A
- Sequence
atctggcgcatgcgcatcttttgt[G/A]gtgccgcaagatggctgccagcca
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) tibial nerve
- ASB for transcription factors
- TYY1_HUMAN EP300_HUMAN INT11_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 0.66 | 2.89 | 1.37 | n/a | No Hit | |||
| EP300_HUMAN | -0.06 | 1.32 | 1.33 | n/a | n/a | |||
| INT11_HUMAN | 2.00 | -0.07 | 1.00 | n/a | n/a | |||
| RBM25_HUMAN | -1.47 | 2.24 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood