rs6973458 chr7:38178000 C>T
- Sequence
gaagcgggcgcttgttaaaccgtg[C/T]gatgcacaatgcgggaaagtccaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes A549 (lung carcinoma) monocyte-derived dendritic cells
- ASB for transcription factors
- STAT1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -0.31 | 2.44 | 1.60 | n/a | No Hit | |||
| FOXK2_HUMAN | -3.10 | 3.27 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood