rs6976251 chr7:6009650 G>C

Sequence
ccagggactcactcagacttttat[G/C]ttttaaaagatttatccaggccgg
ASB in cell types
HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) breast tumor
ASB for transcription factors
RARA_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN -0.86 1.33 1.000.01 1.00 n/a No Hit
ANDR_HUMAN -1.02 2.44 0.960.02 2.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Frontal_Cortex_BA9,  Brain_Putamen_basal_ganglia,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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