rs7003060 chr8:18872308 T>G

Sequence
aatttttttggccagcagggagcg[T/G]tttgttgactctctgtgttttacg
ASB for transcription factors
CTCF_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.44 -0.71 0.021.00 1.22 2.58 Discordant
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Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  hdl cholesterol,  mitral annular calcium,  obesity with early age of onset (age >2),  premature ovarian failure,  rheumatoid arthritis
GTEx eQTL Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Pancreas

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