rs7021642 chr9:35657841 G>A
- Sequence
ggagctgacggatgacgcccccgc[G/A]ccacgccgctcagcgggatacgct
- ASB in cell types
- BEAS-2B (bronchial epithelium) 22RV1 (prostate carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) germinal center CD77+ B cells
- ASB for transcription factors
- GCR_HUMAN ANDR_HUMAN EGR1_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.66 | -2.54 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.58 | n/a | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | -0.67 | 2.37 | 1.00 | 1.51 | Weak Concordant | |||
| TF65_HUMAN | 1.49 | 0.54 | 2.14 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.47 | -4.70 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid