rs7071002 chr10:132332331 G>C
- Sequence
ggcaggaaggtggtgcctcggccc[G/C]tcgtgccctgtcgcctagctccag
- ASB in cell types
- HepG2 (hepatoblastoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) WA01 (H1, human embryonic stem cells) MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- MAX_HUMAN E2F6_HUMAN CDN1B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | -0.06 | 1.72 | 1.25 | 7.78 | Concordant | |||
| E2F6_HUMAN | -4.07 | 2.30 | 1.50 | 2.71 | Concordant | |||
| CDN1B_HUMAN | 0.48 | 1.60 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood