rs7076585 chr10:73743934 T>C
- Sequence
agacctcagacccccacatgcagg[T/C]tgacaacagttggtgccctttacc
- ASB in cell types
- K562 (myelogenous leukemia) CHL-1 (Melanoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- INT11_HUMAN SMCA5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| INT11_HUMAN | 1.61 | -0.53 | 1.67 | n/a | n/a | |||
| SMCA5_HUMAN | 1.53 | 1.96 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, college completion, diastolic blood pressure (dbp), hdl cholesterol, mitral annular calcium, systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood