rs7089806 chr10:70232863 G>C
- Sequence
ctttaggaagtcactgcccccccc[G/C]gcccggagtcgccttttctccaaa
- ASB in cell types
- BEAS-2B (bronchial epithelium) LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN IKZF1_HUMAN ZFX_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.72 | 1.89 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.42 | -1.11 | 1.17 | n/a | No Hit | |||
| ZFX_HUMAN | 1.23 | -0.35 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | -1.40 | 2.21 | 2.00 | n/a | No Hit | |||
| MAON_HUMAN | 2.27 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood