rs713797 chr22:36368489 T>C

Sequence
gcacacagagcatctggcaaggcg[T/C]cacataggacctggtcaacagcag
ASB in cell types
Peyer's patch 22RV1 (prostate carcinoma) GM02630 (Fanconi anemi)
ASB for transcription factors
ANDR_HUMAN STAG1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.11 n/a 0.021.00 2.00 n/a No Hit
STAG1_HUMAN 1.19 0.83 0.020.72 1.04 n/a n/a
CTCF_HUMAN 0.60 1.14 0.920.03 1.26 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Thyroid,  Whole_Blood

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