rs71512926 chr1:16905256 T>C
- Sequence
gtggtttactgtaaggctgagggc[T/C]atgcattctatggctatgttgttg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) Jurkat (T-cells)
- ASB for transcription factors
- ZN316_HUMAN MTA3_HUMAN MNT_HUMAN T2FA_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | 2.48 | n/a | 4.00 | n/a | n/a | |||
| MTA3_HUMAN | 4.44 | n/a | 3.00 | n/a | n/a | |||
| MNT_HUMAN | 2.69 | -4.53 | 2.67 | n/a | n/a | |||
| T2FA_HUMAN | 1.61 | n/a | 3.00 | n/a | n/a | |||
| NFAC3_HUMAN | 1.49 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood