rs71559403 chr7:101321863 C>T
- Sequence
ccggcgcgcggggcggaaagcggg[C/T]gcgtctgcgactgggagggggtcg
- ASB in cell types
- K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) HEK293 (embryonic kidney) BJAB (Burkitt lymphoma)
- ASB for transcription factors
- RFX1_HUMAN HDAC1_HUMAN MNT_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 0.56 | -0.19 | 1.38 | n/a | No Hit | |||
| HDAC1_HUMAN | 2.62 | -0.63 | 1.21 | n/a | n/a | |||
| MNT_HUMAN | 3.01 | -0.63 | 1.00 | n/a | n/a | |||
| GABPA_HUMAN | 2.30 | 0.43 | 1.37 | n/a | No Hit | |||
| RFOX2_HUMAN | 2.76 | -1.75 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid