rs71603398 chr4:18022222 G>A
- Sequence
gatcccgaagctgaacttggcgcc[G/A]tggcgcgttgcttgccggtcattg
- ASB in cell types
- CD14+ monocytes 22RV1 (prostate carcinoma) breast tumor
- ASB for transcription factors
- TYY1_HUMAN STAT1_HUMAN ANDR_HUMAN SP130_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.93 | -0.23 | 1.00 | 3.57 | Discordant | |||
| STAT1_HUMAN | 1.98 | -1.07 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.56 | -4.79 | 2.00 | n/a | No Hit | |||
| SP130_HUMAN | -2.02 | 2.46 | 1.00 | n/a | n/a | |||
| GABPA_HUMAN | -2.80 | 1.41 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood