rs7162720 chr15:85543981 C>T

Sequence
taagtgctccttctgccttatttc[C/T]ctcctctcatccccagccccaccc
ASB in cell types
22RV1 (prostate carcinoma) tibial nerve spleen
ASB for transcription factors
ANDR_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -5.08 3.00 1.000.01 2.00 n/a No Hit
CTCF_HUMAN 1.10 0.93 0.030.75 1.05 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Lung,  Pancreas,  Testis,  Thyroid,  Whole_Blood

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