rs721576 chr17:1717440 A>G
- Sequence
ggggctgagggtaactaagcagga[A/G]tgatgaggctggagggtgagatcc
- ASB in cell types
- breast tumor adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma)
- ASB for transcription factors
- RBBP5_HUMAN ESR1_HUMAN SRBP2_HUMAN TBP_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | n/a | 3.48 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 3.04 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | -0.41 | 2.02 | 2.67 | 2.61 | Concordant | |||
| TBP_HUMAN | 1.82 | 0.52 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood