rs7215964 chr17:28499368 A>G

Sequence
tagcaggcaggagggtggacaggc[A/G]gcaggtggcacctgtcggcctaat
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.57 -0.18 0.011.00 1.33 -1.29 Weak Concordant
ANDR_HUMAN 2.09 -0.85 0.021.00 1.83 n/a No Hit
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adrenal_Gland,  Breast_Mammary_Tissue,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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