rs7219820 chr17:38752259 C>G
- Sequence
acccgcgacgcctacacgcgacgc[C/G]ttccccttcccacctgcatcatta
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) HT1080 (fibrosarcoma) breast tumor
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN SSRP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.69 | -0.32 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.52 | -1.55 | 2.00 | n/a | No Hit | |||
| SSRP1_HUMAN | -0.13 | 1.74 | 1.20 | n/a | n/a |
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