rs7233 chr2:42169582 A>G
- Sequence
gctgaatgaagtgcccgcccctct[A/G]agcccggagcccggcgctttcccc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- AGO2_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AGO2_HUMAN | 2.17 | -0.91 | 2.00 | n/a | n/a | |||
| SPT5H_HUMAN | 1.13 | -0.38 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, hdl cholesterol change with statins, height, ldl cholesterol, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood