rs7246920 chr19:507450 G>T
- Sequence
taatcaagatggccgccttggggg[G/T]gctctagcgcacagtggaatatgg
- ASB in cell types
- HepG2 (hepatoblastoma) RH4 (alveolar rhabdomyosarcoma) K562 (myelogenous leukemia) Jurkat (T-cells)
- ASB for transcription factors
- GABPA_HUMAN THA11_HUMAN GABP1_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 0.23 | 1.89 | 1.62 | n/a | No Hit | |||
| THA11_HUMAN | n/a | 2.98 | 1.33 | n/a | No Hit | |||
| GABP1_HUMAN | -2.81 | 1.61 | 1.33 | n/a | n/a | |||
| TYY1_HUMAN | 1.33 | 0.91 | 1.23 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Thyroid