rs7247767 chr19:18282103 A>G
- Sequence
cgcctcctgctctgctgtgccgcc[A/G]gggcctcccctagcgcgccttctg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) HL-60 (acute myeloid leukemia) breast tumor GBM39 (Human brain tumor)
- ASB for transcription factors
- CTCF_HUMAN ESR1_HUMAN STAG1_HUMAN INT13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.76 | -0.05 | 1.50 | n/a | No Hit | |||
| ESR1_HUMAN | 3.43 | -0.39 | 1.83 | n/a | No Hit | |||
| STAG1_HUMAN | 2.28 | 0.00 | 1.20 | n/a | n/a | |||
| INT13_HUMAN | 1.40 | 0.77 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.17 | -0.13 | 2.40 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Vagina, Whole_Blood