rs72479723 chr17:8173423 A>G
- Sequence
gtttgtggatatctgctaatcagc[A/G]taacacaaatgtaagtgatcgtca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- CEBPB_HUMAN SP2_HUMAN JUN_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.63 | -0.04 | 2.43 | n/a | No Hit | |||
| SP2_HUMAN | -3.02 | 2.08 | 1.50 | n/a | No Hit | |||
| JUN_HUMAN | -0.95 | 1.15 | 2.93 | n/a | No Hit | |||
| ESR1_HUMAN | 2.37 | -4.60 | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | 2.11 | -1.61 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood