rs7247978 chr19:15837576 T>C
- Sequence
ggacctcacattctgtgtttgtcc[T/C]gattggctagcaacttagaacgtt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN335_HUMAN IKZF1_HUMAN KDM1A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN335_HUMAN | n/a | 3.59 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 0.01 | 1.72 | 1.62 | n/a | No Hit | |||
| KDM1A_HUMAN | -3.46 | 1.50 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood