rs7250058 chr19:35995039 C>T
- Sequence
tgctgtcccctcaagaacacacgt[C/T]ccctacgtgggaggccgcgaccag
- ASB in cell types
- HEK293 (embryonic kidney) breast tumor SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- SP2_HUMAN SMAD3_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | 1.09 | n/a | 4.50 | n/a | No Hit | |||
| SMAD3_HUMAN | 1.80 | -0.52 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.29 | -1.22 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid