rs7253254 chr19:1027798 A>C
- Sequence
ttacagctgacttctgcaggggaa[A/C]ctgcctctgcacgctctgagggca
- ASB in cell types
- Raji (Burkitt lymphoma) SU-DHL-2 (anaplastic large cell lymphoma)
- ASB for transcription factors
- ITF2_HUMAN P63_HUMAN ZN768_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ITF2_HUMAN | n/a | 1.80 | 2.50 | n/a | No Hit | |||
| P63_HUMAN | -1.19 | 2.21 | 2.00 | 4.64 | Concordant | |||
| ZN768_HUMAN | -4.53 | 2.70 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid