rs7253360 chr19:38226624 A>G
- Sequence
ggcccctctcctggaacaggaggt[A/G]ggtctctgattcacatatggcctg
- ASB in cell types
- K562 (myelogenous leukemia) GM19193 (female B-cells Lymphoblastoid Cell Lines) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.82 | 0.24 | 1.45 | 2.87 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg