rs7258674 chr19:48255771 A>G
- Sequence
agcctccgtttctccttcctgtac[A/G]ctagggctcctgaaactcacctgg
- ASB in cell types
- HepG2 (hepatoblastoma) MDA-MB-231 (breast adenocarcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BRD2_HUMAN ELF4_HUMAN TADBP_HUMAN MXI1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 1.70 | 0.13 | 1.75 | n/a | n/a | |||
| ELF4_HUMAN | n/a | 2.88 | 2.00 | n/a | n/a | |||
| TADBP_HUMAN | 2.49 | -2.03 | 1.00 | n/a | n/a | |||
| MXI1_HUMAN | -2.00 | 2.37 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood