rs72603871 chr8:81842225 C>G
- Sequence
cctcctccctcagcagcgagaagc[C/G]tcacgtgacacccccgccccaaaa
- ASB in cell types
- HepG2 (hepatoblastoma) breast tumor HCT-116 (colon carcinoma) A549 (lung carcinoma)
- ASB for transcription factors
- RAD51_HUMAN ESR1_HUMAN SPT5H_HUMAN USF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | -2.69 | 2.52 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.76 | -4.99 | 2.00 | n/a | No Hit | |||
| SPT5H_HUMAN | 2.59 | -2.46 | 1.00 | n/a | n/a | |||
| USF2_HUMAN | 0.84 | 1.67 | 1.31 | 7.90 | Concordant | |||
| REQU_HUMAN | -2.02 | 2.46 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood