rs72640287 chr1:11905735 C>T
- Sequence
taaaagtgctttgctttgttgtgg[C/T]tgatggtgatgaggtttaggaagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF2_HUMAN RUNX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 0.13 | 3.07 | 1.00 | n/a | n/a | |||
| RUNX3_HUMAN | n/a | 3.07 | 1.00 | 3.10 | Concordant |
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Motif analysis
Genetic associations
EMBL-EBI diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test), diastolic blood pressure x smoking status (current vs non-current) interaction (2df test), diastolic blood pressure x smoking status (ever vs never) interaction (2df test), systolic blood pressure x alcohol consumption interaction (2df test), systolic blood pressure x smoking status (current vs non-current) interaction (2df test), systolic blood pressure x smoking status (ever vs never) interaction (2df test)
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Atrial_Appendage, Whole_Blood