rs72658579 chr1:19882290 T>C
- Sequence
agggcggaatagaacaaaccaaga[T/C]gggtgcccctccagctctctatgg
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes brain prefrontal cortex region tissues foreskin keratinocyte
- ASB for transcription factors
- STAT1_HUMAN STAG1_HUMAN OLIG2_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.53 | n/a | 2.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.40 | 0.98 | 1.06 | n/a | n/a | |||
| OLIG2_HUMAN | 2.35 | -0.13 | 1.00 | n/a | No Hit | |||
| SP2_HUMAN | n/a | 2.08 | 2.00 | n/a | No Hit | |||
| PRD10_HUMAN | -1.10 | 1.43 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Nerve_Tibial, Whole_Blood