rs72674051 chr1:44819746 C>G
- Sequence
cgtcttctagagtcaagagactct[C/G]ccgccccagcttctccaataggtg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ZN282_HUMAN IKZF2_HUMAN ILF3_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN282_HUMAN | 2.05 | -2.05 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 2.69 | -2.37 | 1.00 | n/a | n/a | |||
| ILF3_HUMAN | 1.30 | -1.30 | 1.00 | n/a | n/a | |||
| SPT5H_HUMAN | 0.48 | -0.48 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.31 | -0.31 | 1.21 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood