rs7268140 chr20:50790570 A>G
- Sequence
gcctgcgctgggagaactgacttt[A/G]aaaagacacagacaggcagtcatt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) stomach
- ASB for transcription factors
- EP300_HUMAN SMCA4_HUMAN ARI1A_HUMAN GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | -4.19 | 2.47 | 1.50 | n/a | n/a | |||
| SMCA4_HUMAN | 0.67 | 3.44 | 2.67 | n/a | n/a | |||
| ARI1A_HUMAN | n/a | 3.67 | 3.00 | n/a | n/a | |||
| GRHL2_HUMAN | n/a | 2.40 | 3.25 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, cardiac neonatal lupus, fasting insulin, homa-ir, ldl cholesterol, total cholesterol change with statins, triglycerides change with statins