rs72682416 chr8:119070684 G>A
- Sequence
tatgtgaaattctgacctctagtg[G/A]tctcccttgaaaataacagcgata
- ASB in cell types
- glioblastoma cells GM19193 (female B-cells Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.29 | -0.28 | 2.11 | -3.32 | Concordant | |||
| STAG1_HUMAN | 2.75 | -1.53 | 2.10 | n/a | n/a | |||
| IKZF2_HUMAN | 1.65 | -0.26 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Thyroid